Thinking about it, I would not wish to say unequivocally that the secondary voltage could not increase but I would normally expect something to fail within a very short time if it did due to the high currents involved.
To illustrate, I have created this diagram of an ideal transformer with some shorted turns,
While it is true that there are now, effectively, only 900 turns in the primary (which would give 26.67 volts on the secondary were it not for the short), there are also, in effect, two tappings on the primary which are 100 turns apart and which will have a voltage induced across them. Since they are shorted, this part of the winding will carry a lot of current. Consequently, the remaining 900 turns of the primary will also carry a lot of current.
In an ideal transformer, a short such as this will present itself as a dead short across the whole primary. A real transformer could, I suspect, continue to operate for the short time that it took the shorted section of winding to cook completely or until something such as a thermal fuse blew.
Of course, it could be that the shorted section fails open, in which case there would be, in effect, a primary of 900 turns and no shorts. This would provide a higher secondary voltage although I would not expect a transformer in this condition to continue to do so for very long. In the OP's case, as the transformer has not been replaced and the pump is now working normally, I consider this a most unlikely scenario.
Julian F. G. W.